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AT1G78780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pathogenesis-related family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pathogenesis-related family protein; Has 199 Blast hits to 198 proteins in 70 species: Archae - 0; Bacteria - 51; Metazoa - 15; Fungi - 40; Plants - 91; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:844214eggNOG:ENOG410IGU2eggNOG:ENOG4111JSHEMBL:CP002684
EnsemblPlants:AT1G78780EnsemblPlants:AT1G78780.1EnsemblPlants:AT1G78780.3entrez:844214
ExpressionAtlas:F4IBV0Gene3D:3.10.450.50GeneID:844214Gramene:AT1G78780.1
Gramene:AT1G78780.3hmmpanther:PTHR31723InterPro:IPR032710KEGG:ath:AT1G78780
Proteomes:UP000006548RefSeq:NP_001077841.1RefSeq:NP_849901.1SUPFAM:SSF54427
TAIR:AT1G78780UniGene:At.34243UniGene:At.48392UniProt:F4IBV0
Coordinates (TAIR10) chr1:-:29621447..29622153
Molecular Weight (calculated) 19969.50 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.49
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSHKIRLQ DFKTINPEKF KLFVNGREGL SAEETLRLGS YNALLKNSLP EEFQYYKPEE ESFESSHDAF RSALPRGFAW EILSVYSGPP VIAFKFRHWG
101: YFEGTFKGHA PTGEMVQFLG LGVLKVDESL RAEEIEIYYD PGELFGGLLK GPPISETKTT DSGDNTAEKQ SCPFTH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)