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AT1G68170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.711
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: embryo, leaf whorl, seed; EXPRESSED DURING: C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G25270.1); Has 2511 Blast hits to 2498 proteins in 458 species: Archae - 10; Bacteria - 1084; Metazoa - 4; Fungi - 0; Plants - 1225; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
Protein Annotations
BioGrid:28366eggNOG:ENOG410IE84eggNOG:ENOG410YFQGEMBL:AC016447
EMBL:CP002684EnsemblPlants:AT1G68170EnsemblPlants:AT1G68170.1entrez:843145
GeneID:843145Genevisible:F4HVM3GO:GO:0005886GO:GO:0006810
GO:GO:0016021GO:GO:0022857GO:GO:0055085Gramene:AT1G68170.1
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF7InParanoid:F4HVM3InterPro:IPR000620
InterPro:IPR030184KEGG:ath:AT1G68170OMA:AFFIERGPANTHER:PTHR31218
PaxDb:F4HVM3Pfam:F4HVM3Pfam:PF00892PIR:A96705
PRIDE:F4HVM3PRO:PR:F4HVM3ProteinModelPortal:F4HVM3Proteomes:UP000006548
RefSeq:NP_176984.2SUPFAM:0043518TAIR:AT1G68170TMHMM:TMhelix
UniGene:At.35562UniProt:F4HVM3
Coordinates (TAIR10) chr1:+:25551925..25554258
Molecular Weight (calculated) 38799.70 Da
IEP (calculated) 9.47
GRAVY (calculated) 0.79
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDITAMVVV QIATAGLNIF FKLAMEDGMN PSVLVAYRLL FATLFMIPIC FIFQRKKRPE FTCRLMLLAL LSGLLGVVIP SILTITGLAL TSATFTSAAG
101: VLTPLVTFIF AALLRMESVR LGSSVGLAKV FGTLFGVGGA LVFIFYRGIE IRLWSTHVNL VNQPRDSSRD ATTHHISILG ALLVFGGNIS ISLWFLLQVK
201: ISKQFGGPYW NATLMNMMGG VVAMLVALCW EHDLDEWRLG WNIRLLTIAY AAILISGMVV AVNAWCIESR GPLFVSVFSP VGLVIVALVG SFLLDETLHL
301: GSIIGTVIIV GALYIVLWAK NKEMKSMLTT SDHNETNKTS KDITVNNLPT LSTNVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)