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AT1G67970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock transcription factor A8
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor A8 (HSFA8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2085 Blast hits to 2073 proteins in 225 species: Archae - 0; Bacteria - 3; Metazoa - 333; Fungi - 465; Plants - 781; Viruses - 0; Other Eukaryotes - 503 (source: NCBI BLink).
Protein Annotations
BioGrid:28346eggNOG:COG5169eggNOG:KOG0627EMBL:AC012563
EMBL:AJ251866EMBL:AY094396EMBL:CP002684EnsemblPlants:AT1G67970
EnsemblPlants:AT1G67970.1entrez:843125Gene3D:1.10.10.10GeneID:843125
Genevisible:Q9S7U5GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0043565Gramene:AT1G67970.1hmmpanther:PTHR10015
hmmpanther:PTHR10015:SF156HOGENOM:HOG000029171InParanoid:Q9S7U5InterPro:IPR000232
InterPro:IPR011991InterPro:IPR027725KEGG:ath:AT1G67970KO:K09419
MINT:MINT-8063785OMA:QPKENSWPANTHER:PTHR10015PaxDb:Q9S7U5
Pfam:PF00447Pfam:Q9S7U5PhylomeDB:Q9S7U5PIR:F96702
PRIDE:Q9S7U5PRINTS:PR00056PRO:PR:Q9S7U5PROSITE:PS00434
ProteinModelPortal:Q9S7U5Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511
Reactome:R-ATH-3371568Reactome:R-ATH-3371571RefSeq:NP_176964.1scanprosite:PS00434
SMART:SM00415SMR:Q9S7U5STRING:3702.AT1G67970.1SUPFAM:SSF46785
TAIR:AT1G67970tair10-symbols:AT-HSFA8tair10-symbols:HSFA8UniGene:At.5972
UniProt:Q9S7U5
Coordinates (TAIR10) chr1:-:25484844..25486313
Molecular Weight (calculated) 42632.20 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.66
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKSTDGGGG SSSSSSVAPF LRKCYDMVDD STTDSIISWS PSADNSFVIL DTTVFSVQLL PKYFKHSNFS SFIRQLNIYG FRKVDADRWE FANDGFVRGQ
101: KDLLKNVIRR KNVQSSEQSK HESTSTTYAQ EKSGLWKEVD ILKGDKQVLA QELIKVRQYQ EVTDTKMLHL EDRVQGMEES QQEMLSFLVM VMKNPSLLVQ
201: LLQPKEKNTW RKAGEGAKIV EEVTDEGESN SYGLPLVTYQ PPSDNNGTAK SNSNDVNDFL RNADMLKFCL DENHVPLIIP DLYDDGAWEK LLLLSPSRKK
301: TKKQENIVKK GKDDLTLEEE EEDGTMELDK SYMLKLISEE MEKPDDFEFG QLTPERSRNL EILTEQMELL ASNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)