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AT1G66370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 113
Curator
Summary (TAIR10)
Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis.
Computational
Description (TAIR10)
myb domain protein 113 (MYB113); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: production of anthocyanin pigment 1 (TAIR:AT1G56650.1); Has 8567 Blast hits to 8001 proteins in 471 species: Archae - 0; Bacteria - 0; Metazoa - 727; Fungi - 430; Plants - 5847; Viruses - 3; Other Eukaryotes - 1560 (source: NCBI BLink).
Protein Annotations
BioGrid:28176eggNOG:COG5147eggNOG:KOG0048EMBL:AC020665
EMBL:AY008378EMBL:AY519566EMBL:CP002684EnsemblPlants:AT1G66370
EnsemblPlants:AT1G66370.1entrez:842955Gene3D:1.10.10.60GeneID:842955
Genevisible:Q9FNV9GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0009753
GO:GO:0031540Gramene:AT1G66370.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF526
HOGENOM:HOG000237600InParanoid:Q9FNV9IntAct:Q9FNV9InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G66370KO:K09422
OMA:CKTKMINPaxDb:Q9FNV9Pfam:PF00249Pfam:Q9FNV9
Pfscan:PS51294PhylomeDB:Q9FNV9PIR:A96689PRIDE:Q9FNV9
PRO:PR:Q9FNV9PROSITE:PS51294ProteinModelPortal:Q9FNV9Proteomes:UP000006548
RefSeq:NP_176811.1SMART:SM00717SMR:Q9FNV9STRING:3702.AT1G66370.1
SUPFAM:SSF46689TAIR:AT1G66370tair10-symbols:AtMYB113tair10-symbols:MYB113
UniGene:At.16916UniProt:Q9FNV9
Coordinates (TAIR10) chr1:+:24753634..24754604
Molecular Weight (calculated) 28309.00 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.67
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)