AT1G55650.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT3G13350.1); Has 1535 Blast hits to 1525 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1112; Fungi - 138; Plants - 149; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:20796340..20798481 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 38050.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSTDSSQFEV VPANASALDN DVSSHMSMLY QDIVRNPELF WEMLRDFHES SDKKFKIPIV GGKSLDLHRL FNEVTSRGGL EKVIKDRRCK EVIDAFNFKT 101: TITNSAFVLR KSYLKMLFEF EHLYYFQAPL STFWEKEKAL KLLIEKSANR DKDSQELKPG TVITGIIDGK FESGYLISTK VGSEKLKGML YHISPETKRG 201: KKKAKSSQGD SHKPPKRQRT GYNFFVAEQS VRIKAENAGQ KVSSPKNFGN MWTNLSESDR KVYYEKSRED GKRYKMEILQ YRSLMESRVA EIVAATDAGT 301: SASAAETADE ASQENLAKTD ACTSASSAAE TEDEVSQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)