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AT1G55650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT3G13350.1); Has 1535 Blast hits to 1525 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1112; Fungi - 138; Plants - 149; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411077QeggNOG:KOG0381eggNOG:KOG2744EMBL:AC002328
EMBL:CP002684EnsemblPlants:AT1G55650EnsemblPlants:AT1G55650.1entrez:842014
Gene3D:1.10.150.60Gene3D:1.10.30.10GeneID:842014GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009507
Gramene:AT1G55650.1hmmpanther:PTHR22970hmmpanther:PTHR22970:SF25InParanoid:Q9LG02
InterPro:IPR001606InterPro:IPR009071KEGG:ath:AT1G55650OMA:TITNSAF
PaxDb:Q9LG02Pfam:PF00505Pfam:PF01388Pfam:Q9LG02
Pfscan:PS50118Pfscan:PS51011PIR:H96598PRIDE:Q9LG02
PRO:PR:Q9LG02PROSITE:PS50118PROSITE:PS51011ProteinModelPortal:Q9LG02
Proteomes:UP000006548RefSeq:NP_175961.1SMART:SM00398SMART:SM00501
SMR:Q9LG02STRING:3702.AT1G55650.1SUPFAM:SSF46774SUPFAM:SSF47095
TAIR:AT1G55650UniGene:At.52216UniProt:Q9LG02
Coordinates (TAIR10) chr1:+:20796340..20798481
Molecular Weight (calculated) 38050.90 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.66
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTDSSQFEV VPANASALDN DVSSHMSMLY QDIVRNPELF WEMLRDFHES SDKKFKIPIV GGKSLDLHRL FNEVTSRGGL EKVIKDRRCK EVIDAFNFKT
101: TITNSAFVLR KSYLKMLFEF EHLYYFQAPL STFWEKEKAL KLLIEKSANR DKDSQELKPG TVITGIIDGK FESGYLISTK VGSEKLKGML YHISPETKRG
201: KKKAKSSQGD SHKPPKRQRT GYNFFVAEQS VRIKAENAGQ KVSSPKNFGN MWTNLSESDR KVYYEKSRED GKRYKMEILQ YRSLMESRVA EIVAATDAGT
301: SASAAETADE ASQENLAKTD ACTSASSAAE TEDEVSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)