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AT1G54260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.700
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : winged-helix DNA-binding transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.2); Has 393 Blast hits to 393 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G54260EnsemblPlants:AT1G54260.1entrez:841867
Gene3D:1.10.10.10GeneID:841867GO:GO:0000786GO:GO:0003677
GO:GO:0005634GO:GO:0006334Gramene:AT1G54260.1hmmpanther:PTHR11467
hmmpanther:PTHR11467:SF27InterPro:IPR005818InterPro:IPR011991KEGG:ath:AT1G54260
OMA:EESHTMLPaxDb:F4HV94Pfam:PF00538Pfscan:PS51504
PRIDE:F4HV94PROSITE:PS51504ProteinModelPortal:F4HV94Proteomes:UP000006548
RefSeq:NP_175828.1SMART:SM00526SUPFAM:SSF46785TAIR:AT1G54260
UniGene:At.50951UniProt:F4HV94
Coordinates (TAIR10) chr1:+:20257340..20259176
Molecular Weight (calculated) 22701.60 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.35
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNDARYDAM VFEAVSTIND ENGSNLKEIL RFIEGQHEVP QNFKKLLSYS LGILVSQDKL KKVRNRYKIS VTKAIKPTLT LRPKDSTKPP ELPNWYEEQQ
101: DFRMFLSECL IILVSQGKLE KVLDRYKISE LENKVLEVAP EVVAMKLAES DNKRLIAAEA VEEEERMHKL VEESHTMLQL CLEIHQQCAL GQEVVLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)