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AT1G47760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 102
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 102 (AGL102); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 91 (TAIR:AT3G66656.1); Has 5838 Blast hits to 5838 proteins in 718 species: Archae - 0; Bacteria - 0; Metazoa - 595; Fungi - 308; Plants - 4866; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC012463EMBL:AY141241
EMBL:CP002684EnsemblPlants:AT1G47760EnsemblPlants:AT1G47760.1entrez:841187
GeneID:841187GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT1G47760.1hmmpanther:PTHR11945HOGENOM:HOG000152598
IntAct:Q9FZF2InterPro:IPR002100KEGG:ath:AT1G47760ncoils:Coil
OMA:NIPYTYGPfam:PF00319Pfscan:PS50066PhylomeDB:Q9FZF2
PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_175207.1
SMART:SM00432SMR:Q9FZF2STRING:3702.AT1G47760.1SUPFAM:SSF55455
TAIR:AT1G47760tair10-symbols:AGL102UniGene:At.38560UniProt:Q9FZF2
Coordinates (TAIR10) chr1:+:17572451..17573159
Molecular Weight (calculated) 21283.80 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.66
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRKIEIKF IEDSIERKAT FSRRRNGIFK KADELAKLCN VEIAVLVISP TNIPYTYGYP CFNDVVERIQ NPSASSKLRS LMKELEQIKE FQEDLRKKQQ
101: RNLEKSNMKE NVDLKLEDLV AFKAKLEAYQ AGLKRKHVEM EDLSSPSILS KNTKNKMMRT EYSSGQSKGM YEFRAFGPGF LGTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)