suba logo
AT1G46768.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g46768
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : related to AP2 1
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:26342eggNOG:ENOG410JDFIeggNOG:ENOG410YR8VEMBL:AC083835
EMBL:AF003094EMBL:AY086838EMBL:BT024691EMBL:CP002684
EMBL:Z27045EnsemblPlants:AT1G46768EnsemblPlants:AT1G46768.1entrez:841117
Gene3D:3.30.730.10GeneID:841117Genevisible:Q8LC30GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009409
GO:GO:0009414GO:GO:0009873GO:GO:0045893Gramene:AT1G46768.1
hmmpanther:PTHR31729hmmpanther:PTHR31729:SF2HOGENOM:HOG000237624InParanoid:Q8LC30
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G46768KO:K09286
OMA:QEESTMRPaxDb:Q8LC30Pfam:PF00847Pfam:Q8LC30
Pfscan:PS51032PhylomeDB:Q8LC30PIR:H96511PRIDE:Q8LC30
PRINTS:PR00367PRO:PR:Q8LC30PROSITE:PS51032ProteinModelPortal:Q8LC30
Proteomes:UP000006548RefSeq:NP_564496.1SMART:SM00380SMR:Q8LC30
STRING:3702.AT1G46768.1SUPFAM:SSF54171TAIR:AT1G46768tair10-symbols:RAP2.1
UniGene:At.28676UniProt:Q8LC30
Coordinates (TAIR10) chr1:-:17266046..17266507
Molecular Weight (calculated) 17241.50 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.65
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MEREQEESTM RKRRQPPQEE VPNHVATRKP YRGIRRRKWG KWVAEIREPN KRSRLWLGSY TTDIAAARAY DVAVFYLRGP SARLNFPDLL LQEEDHLSAA
101: TTADMPAALI REKAAEVGAR VDALLASAAP SMAHSTPPVI KPDLNQIPES GDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)