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AT1G43640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.881
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubby like protein 5
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 5 (TLP5); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 930 Blast hits to 929 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 19; Plants - 462; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC007203EMBL:AF424565
EMBL:AY046921EMBL:AY072154EMBL:AY122972EMBL:CP002684
EnsemblPlants:AT1G43640EnsemblPlants:AT1G43640.1entrez:840948Gene3D:3.20.90.10
GeneID:840948Genevisible:Q944S3GO:GO:0003700GO:GO:0006355
GO:GO:0009620GO:GO:0035091Gramene:AT1G43640.1hmmpanther:PTHR16517
hmmpanther:PTHR16517:SF31HOGENOM:HOG000238161InParanoid:Q944S3InterPro:IPR000007
InterPro:IPR001810InterPro:IPR018066InterPro:IPR025659iPTMnet:Q944S3
KEGG:ath:AT1G43640OMA:RWANLPAPaxDb:Q944S3Pfam:PF00646
Pfam:PF01167Pfam:Q944S3PhylomeDB:Q944S3PIR:F96499
PRIDE:Q944S3PRINTS:PR01573PRO:PR:Q944S3PROSITE:PS01200
ProteinModelPortal:Q944S3Proteomes:UP000006548RefSeq:NP_564485.1scanprosite:PS01200
SMR:Q944S3STRING:3702.AT1G43640.1SUPFAM:SSF54518TAIR:AT1G43640
tair10-symbols:AtTLP5tair10-symbols:TLP5UniGene:At.11339UniProt:Q944S3
Coordinates (TAIR10) chr1:-:16439619..16441253
Molecular Weight (calculated) 47847.60 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.36
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)