AT1G26680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcriptional factor B3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: ovule, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 880 Blast hits to 315 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 864; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9219552..9223193 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104838.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.89 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 920 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADQSLLHSP INPHFFQPIL TESRTHLNIP VAFFSKHVEG RNNQNKTVTL RSDASDKTWL VKMDGLKLTD GWEDFAFAHD LRTGDIVVFR LEGEMVFHVT 101: ALGPSCCEIQ YHTSSHNIND DDRNDQINIA SRNSSRVKKN PRKKVESSLD HSRFVAKVSA WCLSNDRLYI PLSFARLNGL NKINSKKIYL QNEEGRSWKL 201: VLRHDKSGMQ TFVQSGWRRF CSENGIRQGQ YTFKLVRKSA PPVIRLCRAK AKPKQRSVAE YSSDHSCFEG SVTPSSLRND LLYLPRSFVN SNRLDKRCSE 301: IVLKNEQGVK WPLVLKRFKS VTYLPKGWTS FCQVNRIKAG DSFKFKLVGT WKKPVLSLCP TQSNNHKTPL ECSEGNKSEE SEEDCLEVKK KKYWSRCRAS 401: VENMDDDQTN IGNSSRKKRV SKNPREKVES SSDHSSFVGS VNPSSLYKDQ LYLPRNFVSS NFLDKRCSEI VLKNERGEKR TLVLKHFKKD LTFLKKGWTS 501: FCQVNRIKAG DSFKFKLVGT WNKPVLSLCP TETNYHKTPL ACSEGNKSEE SEEEGTEDKN TSQDCLEVKK RKYWSTCRAS AENIDDDQTN IGNSSKEKRV 601: KKNPVKKAES SSDHSSFVAN VTASSLNYDR LYLPLSFVSS NGLDKMNGKE IVLLNEEGLS WKFNLKYNQA GKHTYVRPGW SRFCDANGMS QGQQFTFKLV 701: QKHGPPVMYL SLSEHRPKSE SSSHRSYFVG SVTASSIKKD KLYLWKSFVS SNGLDKGCKK IILKNKWGRE WKLVLKHYKS NCFTIIKRGW TSFCQGNGLK 801: AGDSFKFKLV GTGEKPVLSL CPAESSHEKI PLECPEGIDD VNSLSSNPSS GDDSSRSEES EEENMEDKNI SQDCLETKKR KYCSSSSYSQ NRFVTLTLTR 901: SAFQTYKLVS FFNNYASRLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)