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AT1G23290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Ribosomal protein L18e/L15 superfamily protein
Curator
Summary (TAIR10)
Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.
Computational
Description (TAIR10)
RPL27AB; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G70600.1); Has 1087 Blast hits to 1087 proteins in 423 species: Archae - 174; Bacteria - 23; Metazoa - 355; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Protein Annotations
BioGrid:24177eggNOG:COG0200eggNOG:KOG1742EMBL:AC005292
EMBL:AF324716EMBL:AF349525EMBL:AF410280EMBL:BT000542
EMBL:CP002684EMBL:Z26208EnsemblPlants:AT1G23290EnsemblPlants:AT1G23290.1
entrez:838938GeneID:838938Genevisible:Q9LR33GO:GO:0003735
GO:GO:0005730GO:GO:0006412GO:GO:0009506GO:GO:0009791
GO:GO:0009908GO:GO:0010229GO:GO:0022625GO:GO:0022626
Gramene:AT1G23290.1HAMAP:MF_01341hmmpanther:PTHR11721hmmpanther:PTHR11721:SF6
HOGENOM:HOG000231263InParanoid:Q9LR33IntAct:Q9LR33InterPro:IPR001196
InterPro:IPR021131InterPro:IPR030878KEGG:ath:AT1G23290KO:K02900
OMA:RIGKHQKPaxDb:Q9LR33Pfam:PF00828Pfam:Q9LR33
PhylomeDB:Q9LR33PRIDE:Q9LR33PRO:PR:Q9LR33PROSITE:PS00475
ProteinModelPortal:Q9LR33Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_173743.1scanprosite:PS00475SMR:Q9LR33STRING:3702.AT1G23290.1
SUPFAM:SSF52080TAIR:AT1G23290tair10-symbols:RPL27Atair10-symbols:RPL27AB
UniGene:At.20789UniProt:Q9LR33
Coordinates (TAIR10) chr1:+:8263007..8263447
Molecular Weight (calculated) 16293.20 Da
IEP (calculated) 11.23
GRAVY (calculated) -0.54
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)