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AT1G19730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational
Description (TAIR10)
ATTRX4; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 19449 Blast hits to 19098 proteins in 2963 species: Archae - 279; Bacteria - 10803; Metazoa - 1859; Fungi - 973; Plants - 1850; Viruses - 7; Other Eukaryotes - 3678 (source: NCBI BLink).
Protein Annotations
BioGrid:23801eggNOG:COG0526eggNOG:KOG0907EMBL:AC007797
EMBL:AC024609EMBL:AK118542EMBL:AY088698EMBL:BT004710
EMBL:CP002684EMBL:U35828EMBL:Z35473EnsemblPlants:AT1G19730
EnsemblPlants:AT1G19730.1entrez:838562Gene3D:3.40.30.10GeneID:838562
Genevisible:Q39239GO:GO:0000103GO:GO:0005829GO:GO:0005886
GO:GO:0006457GO:GO:0006662GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0045454Gramene:AT1G19730.1hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF274HOGENOM:HOG000292977InParanoid:Q39239InterPro:IPR005746
InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT1G19730
KO:K03671OMA:EFGVEAMPANTHER:PTHR10438PaxDb:Q39239
Pfam:PF00085Pfam:Q39239Pfscan:PS51352PhylomeDB:Q39239
PIR:D86330PIR:S58119PRIDE:Q39239PRO:PR:Q39239
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q39239Proteomes:UP000006548
RefSeq:NP_173403.1scanprosite:PS00194SMR:Q39239STRING:3702.AT1G19730.1
SUPFAM:SSF52833SwissPalm:Q39239TAIR:AT1G19730tair10-symbols:ATH4
tair10-symbols:ATTRX4TIGRfam:TIGR01068TIGRFAMs:TIGR01068UniGene:At.194
UniGene:At.74168UniProt:Q39239
Coordinates (TAIR10) chr1:-:6823163..6824020
Molecular Weight (calculated) 13063.90 Da
IEP (calculated) 5.16
GRAVY (calculated) 0.15
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEEGQVIG CHTNDVWTVQ LDKAKESNKL IVIDFTASWC PPCRMIAPIF NDLAKKFMSS AIFFKVDVDE LQSVAKEFGV EAMPTFVFIK AGEVVDKLVG
101: ANKEDLQAKI VKHTGVTTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)