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AT1G02610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1); Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 107; Plants - 616; Viruses - 18; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:CP002684EnsemblPlants:AT1G02610
EnsemblPlants:AT1G02610.1entrez:837915Gene3D:3.30.40.10GeneID:837915
GO:GO:0008270GO:GO:0016021Gramene:AT1G02610.1hmmpanther:PTHR23012
hmmpanther:PTHR23012:SF93InParanoid:F4HXK4InterPro:IPR011016InterPro:IPR013083
InterPro:IPR022143InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-
KEGG:00380+6.3.2.-KEGG:ath:AT1G02610OMA:RVICMIQPANTHER:PTHR23012
PaxDb:F4HXK4Pfam:PF12428Pfam:PF12906Pfscan:PS51292
PROSITE:PS51292ProteinModelPortal:F4HXK4Proteomes:UP000006548RefSeq:NP_171761.2
SMART:SM00744SMR:F4HXK4STRING:3702.AT1G02610.1SUPFAM:SSF57850
TAIR:AT1G02610TMHMM:TMhelixUniGene:At.42591unipathway:UPA00143
UniProt:F4HXK4
Coordinates (TAIR10) chr1:-:553181..555854
Molecular Weight (calculated) 25668.50 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.38
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDVVLFIDE TYLKSSFNRC RICHEEEAES YFEAPCSCSG TIKFAHRDCI QRWCDEKGNT ICEICLQEYK PGYTTTSKPS RFIETAVTIR DNLHIMRREN
101: GRRRRNRRLV NREESDFQEC NSGVDRGASC CRYLALIFSV ILLIKHAFDA VYGTEEYPYT IFTVLTLKAI GILLPMLVII RTITAIQRSL RYQILESEED
201: TLSSEEEDHG LEEEEQQQHI A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)