AT3G54500.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20175792..20178482 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73880.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIWGDDAETG DHIVPFKVRS EQLNKKEQIE ESKTAEQKIT GTKIDLHDKN LGSSSSHNVD EGLPQPDFCM SSWPDTSLTN ATKVDQDLSA TELSKCLAEP 101: VRYDSTRGGA FLLKQSCFTW VRSFQSNHFK SCVLTLFLPE KTSELGKGPD IFHSSDESKE QGDFDDYSWA NIGSFDDLDR MFSNDVPIFG DGSLSGGDEL 201: WSSSKDVSNS PKSLSSMLDS QDLGLDIRTE FEQQENQQFP LTGKANGLSS QSVPSVRVTL KADQYREHKG QPSVEDQPYQ QNKMMKFSKM PGTSEARPFQ 301: ELYGQRIPFS NSAGKCVNQL APPQSSLMAV NLLSESEGSG TSHYSHMPNQ YMANSAFGNL ANPYSSVPVI SAVQHPDVRN QLMHPSYNPA TATSVNMATD 401: ASARPSTMTP QEKLEKLRRR QQMQAMLAIQ RQQQQFSHQV PVADQSITQN CLQDIPLQLV DKTNLQGLTA MPSFDPSSSL EQDDSGKFAA AVDNSAEFAV 501: LYRLQDVVAK LDMGTRTCIR DSLFRLAGSA AQRHYTSDTS HSNKTSQDDQ EVIPREESRY RYAGMPDTEA VTNPTDRTVA HLLFHRPFDM LAAKRMEGPE 601: SPASSKMGTE EKGNFPKCSI RETHLTKQKA QKEEGPADSL ALGNAPNSGS SSTVGERVVE ASQGNKRKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)