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AT3G53490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGZeggNOG:ENOG4111PKIEMBL:AL132966EMBL:BT010898EMBL:CP002686EnsemblPlants:AT3G53490EnsemblPlants:AT3G53490.1
entrez:824517GeneID:824517GO:GO:0016021Gramene:AT3G53490.1hmmpanther:PTHR33780hmmpanther:PTHR33780:SF3KEGG:ath:AT3G53490
OMA:EDMFRNDPhylomeDB:Q9LFG9PIR:T45889Proteomes:UP000006548RefSeq:NP_190917.1STRING:3702.AT3G53490.1TAIR:AT3G53490
TMHMM:TMhelixUniGene:At.35189UniProt:Q9LFG9
Coordinates (TAIR10) chr3:+:19832666..19834024
Molecular Weight (calculated) 25606.40 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.34
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIQIPSASW DFRGFLLCFI FFSSLPGTIL TQEVTLDSVQ IFTTHDWFST KPTVFFQCKG ENKTVLPDVK RTNVSYSFNG EESWQPLTEL QGTKCKRCGI
101: YEDDPLKYDT FDEWELCPSD FTAEGSYKRF KEKEFNATFL CHGCSQVGAG SNKESGTEKE EQKGGMHPGI VVLIVVLLLG VVAVGLLVGY KYWRKKKRQQ
201: EQARFLKLFE DGDDIEDELG LENTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)