AT3G49010.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : breast basic conserved 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 743 Blast hits to 743 proteins in 279 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 163; Plants - 147; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18166971..18168047 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23540.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.66 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||
| Length | 204 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKHNNVIPNG HFKKHWQNYV KTWFNQPARK TRRRIARQKK AVKIFPRPTS GPLRPVVHGQ TLKYNMKVRT GKGFTLEELK AAGIPKKLAP TIGIAVDHRR 101: KNRSLEGLQT NVQRLKTYKT KLVIFPRRAR KAGDSTPEEL ANATQVQGDY LPIVREKPTM ELVKLTSEMK SFKAFDKIRL ERTNKRHAGA RAKRAAEAEK 201: EEKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)