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AT1G78800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.789
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 5 (TAIR:AT5G37180.1); Has 14746 Blast hits to 14703 proteins in 2118 species: Archae - 647; Bacteria - 10061; Metazoa - 282; Fungi - 266; Plants - 467; Viruses - 0; Other Eukaryotes - 3023 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0438eggNOG:KOG0853EMBL:CP002684EMBL:KJ138925EnsemblPlants:AT1G78800EnsemblPlants:AT1G78800.1entrez:844216
GeneID:844216GO:GO:0016021GO:GO:0016740Gramene:AT1G78800.1InterPro:IPR001296InterPro:IPR028098KEGG:ath:AT1G78800
KO:K03843ncoils:CoilOMA:GETGWLRPfam:PF00534Pfam:PF13439Pfam:PF13579Proteomes:UP000006548
Reactome:R-ATH-446193RefSeq:NP_178001.2SMR:F4IBV4STRING:3702.AT1G78800.1SUPFAM:SSF53756TAIR:AT1G78800TMHMM:TMhelix
UniGene:At.34237UniProt:F4IBV4
Coordinates (TAIR10) chr1:-:29625859..29627941
Molecular Weight (calculated) 45030.30 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.00
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKEGSKMN IAIIHPDLGI GGAERLIVDA AVELASHGHK VHIFTSHHDK SRCFEETLSG IFQVTVYGSF LPRHIFYRLH AVCAYLRCLF VALCVLLGWS
101: SFDVVLADQV SVVVPLLKLK RSSKVVFYCH FPDLLLAKHT TTLRRMYRKP IDFIEEQTTG MADMILVNSN FTASTFANTF KRLNAQGSRP AVLYPAVNID
201: QFIEPHTYKL NFLSINRFER KKNIDLAVSA FAILCKHKQN LSDVTLTVAG GYDERLKENV EYLEELRSLA EKEGVSDRVN FITSCSTAER NELLSSCLCV
301: LYTPTDEHFG IVPLEAMAAY KPVIACNSGG PVETVKNGVT GYLCEPTPED FSSAMARFIE NPELANRMGA EARNHVVESF SVKTFGQKLN QYLVDVVSSP
401: KED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)