AT1G01570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 558 Blast hits to 547 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 169; Plants - 281; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:205176..207435 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 55083.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.90 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRLIFLILA ILFSLQFVFY PLNFISSSSQ PLIKFSVSPV VSGSGSVHEP DQTELKHVVF GIAASAKFWK HRKDYVKLWW KPNGEMNGVV WLDQHINQND 101: NVSKTLPPIR ISSDTSRFQY RYPKGLRSAI RITRIVSETV RLLNGTELEK NVRWIVMGDD DTVFFPENLV KVLRKYDHNQ FYYIGSSSES HIQNLKFSYG 201: MAYGGGGFAI SYPLAKALEK MQDRCIQRYS ELYGSDDRIH ACMSELGVPL TKEVGFHQID LYGKLLGLLS AHPLAPLVSI HHLDLVDPVF PNMGRVNAMR 301: RFMVPAKLDS PSLAQQSICY DADHRWTVSV SWGYTVQIIR GVLSAREMVI PTRTFIDWYK QADERSYAFN TRPIAKSACQ RPRVYYLSNA LPDLALRRTA 401: SEYVRWYDMW EPECDWDMSD PSEFERVIVY KKPDPDRWNK HRAPRRDCCR VLPTTKNGTM VIDVGACKDD EFAEFLVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)