AT5G63740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 179119 Blast hits to 41759 proteins in 2045 species: Archae - 1298; Bacteria - 52257; Metazoa - 41414; Fungi - 23882; Plants - 9817; Viruses - 3088; Other Eukaryotes - 47363 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25510776..25511456 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 26051.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 3.39 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.55 | ||||||||||||||||||||||||
| Length | 226 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENDQQGSYL RDEDKEEMEK RIRTVVIDSN LVLSNSTCGI CRTAEDEYIK VYDDHNNDGE GDGDGDGDGD EDEDEDADAD EDEDEDEDED DDDDDDDDDD 101: DDADDADDDE DDDDEDDDED EDDDDDDDDE NDEECDDEYD SHRLISTPYC THKFCKTCWR EYLETNFYSL EENLTVISCP DQDCGASVRL KTIEKLGVHD 201: QDMYLSYVMR VYIENESKQL PAPDDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)