AT5G62160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.933 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc transporter 12 precursor | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Fe(II) transporter isolog family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc transporter 12 precursor (ZIP12); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 1 precursor (TAIR:AT3G12750.1); Has 2095 Blast hits to 1976 proteins in 316 species: Archae - 2; Bacteria - 158; Metazoa - 583; Fungi - 630; Plants - 500; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24960107..24961263 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37573.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRFRKTLVS AFVLCLVIFP LLVSAAEEEN QCGGSKGGSA AEKASALKYK IIAFFSILIA GVFGVCLPIF GLKTESNFFM YVKAFAAGVI LATGFVHILP 101: DATESLTSSC LGEEPPWGDF PMTGLVAMAA SILTMLIESF ASGYLNRSRL AKEGKTLPVS TGGEEEHAHT GSAHTHASQG HSHGSLLIPQ DDDHIDMRKK 201: IVTQILELGI VVHSVIIGIS LGASPSVSTI KPLIAAITFH QLFEGFGLGG CISEAKFRVK KIWVMLMFFA LTAPIGIGIG IGVAEIYNEN SPMALKVSGF 301: LNATASGILI YMALVDLVAP LFMNQKTQSS MKIQVACSVS LVVGAGLMSL LAIWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)