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AT5G53640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53635.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G53640EnsemblPlants:AT5G53640.1entrez:835445hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126Pfam:PF00646Pfam:PF07723
Pfam:PF08387SUPFAM:SSF52047
Coordinates (TAIR10) chr5:-:21788311..21790690
Molecular Weight (calculated) 59891.70 Da
IEP (calculated) 9.28
GRAVY (calculated) 0.01
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRRKKSKQA CSKGLNQRLK EDRISQFYES LLCQILNYLP TKDVVKTSVL STRWRSLWLL VPSLELDSRD FSDFNTFVSF CDRYFDSNRV LCINKLKLTI
101: SENEEDGFYL KSWIDAAAKR KIQHLDVQFL PQFHKIHFNL YKCEALVSLR LFEVSLDKGR IFSFPCMKTM HLEDNVYPNE ATFKELISCC PVLEDLTVII
201: YGMDRKVFQI EGRYDAKFVS FPCMKTMHLE DNMYPNESTF KKLISCCPVL EDLTVIIYGM DRKVFRVHSQ SLKRFSLKRV SSFLHEVALS GVVIDAPLLC
301: SLRINDNVSK SFIVNNLGSN DKLDLSILFG LWHFDETSVT SMRSSIDRFL PGILSVMEMT IHSPAFMLMY RYLALIPLPH LPKFSYMSRL SVTLGVSDLQ
401: FLPTFLESCP NLKSLIMESN SNSKRMLLNG NYHINFSSVP KCLLSSLEFV DIKSSILVYV ARMKLVKYFL ENSTTLKKLT LRLALRLQYC SAKDEIVKKL
501: RKFPRISKTC QVGIVFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)