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AT5G48770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G72840.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB012242EMBL:CP002688EnsemblPlants:AT5G48770EnsemblPlants:AT5G48770.1
entrez:834935Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:834935GO:GO:0005829GO:GO:0007165GO:GO:0043531
Gramene:AT5G48770.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF169HOGENOM:HOG000064702
InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT5G48770Pfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9FKB9
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_199688.1SMART:SM00255
SMR:Q9FKB9SUPFAM:SSF46785SUPFAM:SSF52047SUPFAM:SSF52058
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G48770UniGene:At.29825
UniGene:At.48071UniGene:At.71954UniProt:Q9FKB9
Coordinates (TAIR10) chr5:-:19773277..19777242
Molecular Weight (calculated) 135272.00 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.13
Length 1190 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSLSSPP PCNYDVFLSF RGEDTRRTIV SHLYAALGAK GIITFKDDQD LEVGDHISSH LRRAIEGSKF AVVVLSERYT TSRWCLMELQ LIMELYNLGK
0101: LKVLPLFYEV DPSDVRHQRG SFGLERYQGP EFADIVQRWR VALCMVANLS GMVSRYCADE AMMLEEIVEV ISSRLASMQA TSFEDLVGME AHMENIRPLL
0201: KKDFDAEVCM VGIWGMGGIG KTTIAKYLYE QLASQFPAHS FIEDVGQICK KVDLKCIQQQ LLCDILSTKR VALMSIQNGA NLIRSRLGTL KVLFVLDGVD
0301: KVEQLHALAK EASWFGPGSR IIITTRDRRL LDSCRVTNKY EVKCLQNEDS LKIVKNIAFA GGVPTLDGYE RFAIRASQLA QGLPLALVAF GSFLRGATSI
0401: DEWEDAIDTL ETAPHQNIMD ILRSSYTNLD LRDKTIFIRV ACLFNGEPVS RVSTLLSETK RRIKGLAEKS LIHISKDGYI DIHSLIKQMA REIVVEESLY
0501: IPRQQRILWD PHNSYGVLES KTGTERIQGM TLHMCELPRA ASIDGSAFEQ MENLIFLKFF KHLNDRESKL NINSKNRMVL PRSLRLLHWD AYPLTTLLPT
0601: FPLSRLVELH LRYSNLENLW DGKMSLLELR MLDVTGSKNL TKLPDLSRAT KLEELIAKGC TRLEQIPETI GSLPSLKKLD VSHCDRLINL QMIIGELPAL
0701: QKRSPGLFRQ ASLSFPDAVV TLNSLTSLAI HGKLNFWLSH LRGKADHLCF SSEQWTPNKF LKQVQKTPKL MSEFYGFKSL DIMQFIYRKD SASFQCYSFS
0801: DFLWLTELNL INLNIESIPD DIGLLQVLQK LDLSGNDFTC LPTDMENLSS MKSLRLCNCL KLQTLPKLPQ LETLKLSNCI LLQSPLGHSA ARKDERGYRL
0901: AELWLDNCND VFELSYTFSH CTNLTYLDLS GNDMVTMPVT IRFLRLLNTL CLNDCKKLKS MVQLPPNLTS LYARGCTSLE IIHLPLDHSI KHVDLSYCPK
1001: LNEVANLMDR FLRCGRKEEV PQRFACLSGS RVPIYFDYQA REYSREISIP PIWHASEFVG FDACIIIACQ SPYHIKLSSS SYSCKQEDNQ SYRIDLKPDF
1101: VLPPESTRSS NDKEAFSAHH MFIFHVPSNV DFNEFSLEPK LVISEEFQST PGRIISYGVR VVLKTEEDDR NYDINCGNLS KKRKTDMLTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)