suba logo
AT5G43770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXNWeggNOG:ENOG41103TMEMBL:AB026651EMBL:AK175620
EMBL:BT010529EMBL:CP002688EnsemblPlants:AT5G43770EnsemblPlants:AT5G43770.1
entrez:834399GeneID:834399Gramene:AT5G43770.1KEGG:ath:AT5G43770
OMA:SPPMPDTProteomes:UP000006548RefSeq:NP_199190.1TAIR:AT5G43770
UniGene:At.23710UniGene:At.66691UniProt:Q9FG86
Coordinates (TAIR10) chr5:+:17588807..17589370
Molecular Weight (calculated) 19680.60 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.45
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLISANLMR GTFFVCSSFK SKPWSGRLIT AVKSVSCTSK PVRGLTNYST GVYFVSQTGP PEIKFPGGSP SEKELPSGPS RGPELAPLEV PELPNIPEIS
101: PSETPPEVTT VPSDPPPLGP PQTPGPEFPV PPSPSPPMPD TPNPPTPKTP PDVVPPIWEP PRPPDIFPPE SPPPGIDPPP PLGPTIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)