AT5G40560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DegP protease 13 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative DegP protease. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DegP protease 13 (DegP13); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 10 (TAIR:AT5G36950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16244543..16246519 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45716.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIITNAHVVA NHILVLVIKR GSPKKYKAEV KAIGRECDLA ILVIESKEFW EDMNPLELGD MPFLQESVNV IGYPTGGENI SVTKGVVSRI ESMDYAHGAI 101: NLPAIQTDAA MNPGNSGGPV CIGNKVVGVA FQTLGHSNNI GCLIPAPVVK HFITGVEKTG QYVGFCSLNL SYQHMDAQTR SHFKMNSEMT GILIYNINQH 201: SDALNILKKY DVILSIDGVA IENDGTVIIP NRERTRLDDL VSLKQLGETI LLKILREGKM HEFNITLRPV QRLVPAGQID NNPSYYIFAG FVFVPLRKQH 301: FKGSNGEQIV VISEVLADVI NVEYYMYKHL KVNSVNKVKV ENLKHLCELI EKCCTKDLRL ELGDGRVIIL DYQFAKSSTS LILERHRVPW AMSKDLMTDQ 401: STTCSSTRLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)