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AT5G40350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 24
Curator
Summary (TAIR10)
Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.
Computational
Description (TAIR10)
myb domain protein 24 (MYB24); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 21 (TAIR:AT3G27810.1); Has 8771 Blast hits to 8031 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 787; Fungi - 465; Plants - 5769; Viruses - 6; Other Eukaryotes - 1744 (source: NCBI BLink).
Protein Annotations
BioGrid:19284eggNOG:COG5147eggNOG:KOG0048EMBL:AB006702EMBL:AF175987EMBL:AY086615EMBL:AY519632
EMBL:CP002688EnsemblPlants:AT5G40350EnsemblPlants:AT5G40350.1entrez:834033Gene3D:1.10.10.60GeneID:834033Genevisible:Q9SPG9
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009740GO:GO:0009753GO:GO:0009867
GO:GO:0048443GO:GO:0080086Gramene:AT5G40350.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF531HOGENOM:HOG000237600InParanoid:Q9SPG9
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G40350KO:K09422OMA:TYLEIELPaxDb:Q9SPG9
Pfam:PF00249Pfam:Q9SPG9Pfscan:PS51294PhylomeDB:Q9SPG9PRIDE:Q9SPG9PRO:PR:Q9SPG9PROSITE:PS51294
ProteinModelPortal:Q9SPG9Proteomes:UP000006548RefSeq:NP_198851.1SMART:SM00717SMR:Q9SPG9STRING:3702.AT5G40350.1SUPFAM:SSF46689
TAIR:AT5G40350tair10-symbols:AtMYB24tair10-symbols:MYB24UniGene:At.48058UniGene:At.8437UniProt:Q9SPG9
Coordinates (TAIR10) chr5:-:16138703..16140946
Molecular Weight (calculated) 24460.60 Da
IEP (calculated) 7.23
GRAVY (calculated) -0.83
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKRESSGGS GSGDAEVRKG PWTMEEDLIL INYIANHGEG VWNSLAKSAG LKRTGKSCRL RWLNYLRPDV RRGNITPEEQ LTIMELHAKW GNRWSKIAKH
101: LPGRTDNEIK NFWRTKIQKY IIKSGETTTV GSQSSEFINH HATTSHVMND TQETMDMYSP TTSYQHASNI NQQLNYGNYV PESGSIMMPL SVDQSEQNYW
201: SVDDLWPMNI YNGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)