suba logo
AT5G35300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G35300EnsemblPlants:AT5G35300.1entrez:833484
GeneID:833484Gramene:AT5G35300.1KEGG:ath:AT5G35300PaxDb:F4JYD3
PRIDE:F4JYD3Proteomes:UP000006548RefSeq:NP_198380.1TAIR:AT5G35300
UniGene:At.55130UniProt:F4JYD3
Coordinates (TAIR10) chr5:+:13518317..13518949
Molecular Weight (calculated) 11010.70 Da
IEP (calculated) 3.99
GRAVY (calculated) 0.77
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MALILPYRLR EPGALLKLFL GAEAVECNGA CLVVITSSSL PLSCGQVMLS SCSLDYIQMS LVGRSLALIG MTSLMSIPPL NLVDFSFMEY VFPVADLENE
101: YG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)