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AT5G25430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : HCO3- transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT4G32510.1); Has 2636 Blast hits to 1421 proteins in 197 species: Archae - 0; Bacteria - 18; Metazoa - 1993; Fungi - 285; Plants - 221; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPHDeggNOG:KOG1172EMBL:AC006258EMBL:CP002688
EMBL:GU971377EnsemblPlants:AT5G25430EnsemblPlants:AT5G25430.1entrez:832617
GeneID:832617Genevisible:Q3E954GO:GO:0005452GO:GO:0016021
Gramene:AT5G25430.1hmmpanther:PTHR11453hmmpanther:PTHR11453:SF39HOGENOM:HOG000015213
InParanoid:Q3E954InterPro:IPR003020InterPro:IPR011531KEGG:ath:AT5G25430
OMA:VHIEANLPANTHER:PTHR11453PaxDb:Q3E954Pfam:PF00955
Pfam:Q3E954PhylomeDB:Q3E954PRIDE:Q3E954PRO:PR:Q3E954
ProteinModelPortal:Q3E954Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673
Reactome:R-ATH-425381RefSeq:NP_197925.4STRING:3702.AT5G25430.1TAIR:AT5G25430
TMHMM:TMhelixUniGene:At.54998UniProt:Q3E954
Coordinates (TAIR10) chr5:+:8851251..8854259
Molecular Weight (calculated) 75556.30 Da
IEP (calculated) 7.82
GRAVY (calculated) 0.30
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSEGESGPF QGILRDIEGR RKCYKQDWIR GIKTGIRILA PTCYIFFASS LPVVAFGEQL SKHTGGALSA VETLASTSIC GIIHAIFGGQ PLLIVGVAEP
101: TIIMYTYLYS FCISRPDIGR ELYLAWVAWV CVWTSVLLIL LSIFNAGTII TRFTRIAGEL FGMLIAVLFL QEAIKGLISE FHAPEIKNQE TGKSHFLLIY
201: ANGLLAVIFS LGLLITALKS RRAKSWKYGF GWLRSFIGDY GVPLMVLLWT ALSYTVPSEV LPSVPRRLFC PLPWEPASLY HWTVVKDMGK VPIMYILAAF
301: IPGVMIAGLY FFDHSVASQM AQQKEFNLKN PSAYHYDIFL LGIITLICGL LGLPPSNGVL PQAPMHTKSL AVLNRQLIRK KMVKKAKECM KMKASKSEIY
401: GRMQSVFIEM ETSPPQDNSV ATDLKELKEV VMRPDEGGDT KGKFDPDVHI EANLPVRVNE QRVSNLLQSV LVGLTLLAVT VIKMIPSSVL WGYFAYMAID
501: SLPGNQFWER LLLLFIPPSR LFKVLEGVHA SFVELVPYRV IVTFTLFQLV YFLLCYGMTW IPMAGIFFPA LFFLLISIRE HLLPKLFDMQ HLQVLDASDY
601: EEIVAAPIQH SSFAYRKLGS SHHLSEGEDE FYDAEILDEM TTSRGEIRIR TISFKEVHPE PEEKHVTFEP H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)