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AT5G23960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : terpene synthase 21
Curator
Summary (TAIR10)
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational
Description (TAIR10)
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23960-MONOMERBioCyc:ARA:GQT-2261-MONOMERBioCyc:MetaCyc:AT5G23960-MONOMEREC:4.2.3.-
eggNOG:ENOG410IVC5eggNOG:ENOG410YBXHEMBL:AB009056EMBL:AF497491
EMBL:AJ544238EMBL:CP002688EnsemblPlants:AT5G23960EnsemblPlants:AT5G23960.1
entrez:832461Gene3D:1.10.600.10Gene3D:1.50.30.10GeneID:832461
Genevisible:Q84UU4GO:GO:0000287GO:GO:0005737GO:GO:0016106
GO:GO:0051762GO:GO:0080016GO:GO:0080017GO:GO:0080027
gramene_pathway:4.2.3.-gramene_pathway:PWY-6275hmmpanther:PTHR31225hmmpanther:PTHR31225:SF15
HOGENOM:HOG000232971InParanoid:Q84UU4InterPro:IPR001906InterPro:IPR005630
InterPro:IPR008930InterPro:IPR008949KEGG:ath:AT5G23960KO:K14184
OMA:NESATMIPaxDb:Q84UU4Pfam:PF01397Pfam:PF03936
Pfam:Q84UU4PhylomeDB:Q84UU4PRIDE:Q84UU4PRO:PR:Q84UU4
ProteinModelPortal:Q84UU4Proteomes:UP000006548RefSeq:NP_001190374.1RefSeq:NP_197784.2
SABIO-RK:Q84UU4SMR:Q84UU4STRING:3702.AT5G23960.1SUPFAM:SSF48239
SUPFAM:SSF48576TAIR:AT5G23960tair10-symbols:ATTPS21tair10-symbols:TPS21
UniGene:At.30985UniPathway:UPA00213UniProt:Q84UU4
Coordinates (TAIR10) chr5:+:8092969..8095128
Molecular Weight (calculated) 63621.80 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.30
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE WLPVVPDEIP IPDSMKFIYN VTVEFYDKLD EELEKEGRSG CGFHLKKSLQ KTANGYMQEA KWLKKDYIAT FDEYKENAIL
401: SSGYYALIAM TFVRMTDVAK LDAFEWLSSH PKIRVASEII SRFTDDISSY EFEHKREHVA TGIDCYMQQF GVSKERAVEV MGNIVSDAWK DLNQELMRPH
501: VFPFPLLMRV LNLSRVIDVF YRYQDAYTNP KLLKEHIVSL LIETIPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)