AT5G20870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 2792 Blast hits to 2718 proteins in 160 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 51; Plants - 2724; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7080037..7081739 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54568.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 501 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSHDTYQKL ILFCLSIFFL QNILKNVEGL ACNWGTQASH PLPPNIVVKL LRDNGFNKVK LFEADPGALR ALGKSGIQVM VGIPNDLLAT MASTVTNAEL 101: WVQQNVSQYI SRYGTDIRYV AVGNEPFLKT YNNRFVRSTY PALQNVQAAL VKAGLGRQVK VTVPLNADVY ESSDGLPSSG DFRSDIKTLM ISIVRFLADS 201: VSPITFNIYP FLSLNADPNF PREYAFFPNG GGGGGAKPVV DGSISYTNVF DANFDTLVSA LEKNGFDANK IEIIVGEVGW PTDGDQNANP AMAQRFNQGL 301: LNRILQGQGT PRRRMAPEVY IFSLVDEDAK SIDPGKFERH WGIFSYDGAV KYPLSLGNGR PLVPTKGVRY QAREWCVLST QAAGNGAATW QASATYACQN 401: ADCTSLGPGS SCAALDPTAN ASYAFNMYFQ KMDHRRGSCD FNNLGVVTKI DPSSGSCRFP IEIDTSRQQM SNPPPRNSGA SEAKYRLGAA VVMVICLVFS 501: N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)