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AT5G20340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,3-glucanase 5
Curator
Summary (TAIR10)
Encodes a putative beta 1,3-glucanase.
Computational
Description (TAIR10)
beta-1,3-glucanase 5 (BG5); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 4 (TAIR:AT5G20330.1); Has 2100 Blast hits to 2086 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2090; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20340-MONOMERCAZy:GH17EC:3.2.1.39eggNOG:ENOG410IVTJeggNOG:ENOG410YFZDEMBL:AF296825EMBL:CP002688
EMBL:X79694EnsemblPlants:AT5G20340EnsemblPlants:AT5G20340.1entrez:832156Gene3D:3.20.20.80GeneID:832156Genevisible:O49353
GO:GO:0004338GO:GO:0005576GO:GO:0005975GO:GO:0006952GO:GO:0042973Gramene:AT5G20340.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF103HOGENOM:HOG000238220InterPro:IPR000490InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT5G20340PaxDb:O49353
Pfam:PF00332PhylomeDB:O49353PROSITE:PS00587ProteinModelPortal:O49353Proteomes:UP000006548RefSeq:NP_197534.1scanprosite:PS00587
SMR:O49353STRING:3702.AT5G20340.1SUPFAM:SSF51445TAIR:AT5G20340tair10-symbols:BG5UniGene:At.54926UniProt:O49353
Coordinates (TAIR10) chr5:+:6874787..6875851
Molecular Weight (calculated) 38879.60 Da
IEP (calculated) 5.13
GRAVY (calculated) 0.05
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MLYLPKKLFL FFFSCIVVIV NYNNSDFVNA ANSIGFVNAA NSIGLNYGLL GDNLPSPSKV ITLYKSIDIT KIRIFDPNTE VLNALRGHRD IAVTVGVRDQ
101: DLAALSASEE AVKGWFATNI EPYLSDINIA FITVGNEVIP GPIGPQVLPV MQSLTNLVKS RNLPISISTV VAMWNLEQSY PPSAGMFTSQ AREQLVPVLK
201: LLSQTNSPIL VKIYPYFSYA SDPSSIRLDY ATFNTEAIVV QDGSLGYSNM FDAIFDAFVW AMEKEGVKDL PMVVSETGWP SAGNGNITTP DIAGTYNRNF
301: VKHIASGKGT PKRPNKGIDG FLFATFNENQ KPVGTEQNFG LYNPNDMKPI YNLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)