AT5G19810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G19800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6693052..6693801 | ||||||||||||||||
| Molecular Weight (calculated) | 26261.40 Da | ||||||||||||||||
| IEP (calculated) | 11.45 | ||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||
| Length | 249 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSRRFSLIL LFLLATLITV ANGNNNRKLL TSAPEPAPLV DLSPPPPPVN ISSPPPPVNL SPPPPPVNLS PPPPPVNLSP PPPPVNLSPP PPPVLLSPPP 101: PPVNLSPPPP PVNLSPPPPP VLLSPPPPPV LLSPPPPPVN LSPPPPPVLL SPPPPPVLFS PPPPTVTRPP PPPTITRSPP PPRPQAAAYY KKTPPPPPYK 201: YGRVYPPPPP PPQAARSYKR SPPPPPPSKY GRVYSPPPPG KSWLWFLKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)