AT5G07060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT1G07360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:2194394..2195872 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41756.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 363 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSHRDHGADG WESADFPITC ESCFGDNPYM RMTRADYDKE CKICSRPFTA FRWRPGRNAR FKKTEICQTC SKLKNVCQVC LLDLGFGLPV QVRDSALNIN 101: SHYSVPMSHV NREYFADEHD PKTRAGLDYE SSFGKMQPND TILKLQRRTP SYEKNRPKIC SFYTIGQCKR GAECSFRHEM PETGELSHQN IRDRYYSVND 201: PVAMKLLRKA GEMGTLEPPE DESIKTLYVG GLNSRIFEQD IHDHFYAYGE MESIRVMAED GKYDQSGSNQ QQQGSIAHTG LISQQQNQHS QMQQYYMQPP 301: PPNEYSHYPS MDTQRMGAAF STQESDGSST SENNRAYSSY SYPMPPHQPY PTPPPYIDIY IYI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)