AT5G05070.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.441 endoplasmic reticulum 0.430 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT2G40990.1); Has 5095 Blast hits to 5086 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 760; Plants - 842; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:1496896..1498441 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47780.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRERMSKKK ISQVHCIPSG DHILMTASSS KHIPHIRFYK AWKGNNRFCC GGRLIFGPDV SSLYLTSFLI GAPALTFCIR MLVWIKRGDP FFNYTVLASG 101: FILTLLDFTF LMLTSARDPG IIPRNKTSMI LEDDSDSSLT QSMEWVNNKT PNLKIPRTKD VFVNGYTIKV KFCDTCLLYR PPRASHCSIC NNCVQRFDHH 201: CPWVGQCIAR RNYPFFICFI SSSTLLCIYV FVFSWINLIR QPGKLWRTMS DDIVSVILIV YTFVAVWFVG GLTIFHFYLM STNQTTYENF RYRYDKKENP 301: YKRGLLKNVK EVLFAKIPPS QLDLRAMVPE EDDMTIASND SEYESEYTSS VRYDTEMGGK LIKRDSPRKL PLPTRNLDDI KDISDNYDRS TTTREDASDR 401: DPSFFSSQLD LPK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)