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AT5G01570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.926
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G01570EnsemblPlants:AT5G01570.1entrez:830357
GeneID:830357Gramene:AT5G01570.1hmmpanther:PTHR35730hmmpanther:PTHR35730:SF1
InParanoid:F4K9F4iPTMnet:F4K9F4KEGG:ath:AT5G01570ncoils:Coil
OMA:VIPNIDDPaxDb:F4K9F4PRIDE:F4K9F4ProteinModelPortal:F4K9F4
Proteomes:UP000006548RefSeq:NP_195777.2TAIR:AT5G01570UniGene:At.54673
UniProt:F4K9F4
Coordinates (TAIR10) chr5:+:221367..222798
Molecular Weight (calculated) 23554.90 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.71
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDQSRNFEM VISWGDELIH VLDDRKGFDV LVQTLEQLRA IPFSCDEDFK EIHESLQDLQ KKLDVCKEKT DEANSEIADE EEIERLQKEL DEELELECKL
101: KEELRYEALF EEHRLAIKRN KRDQLRTETK LPMYASVTRV IPNIDDSLKT SGYMVGRDKR LMDKFEFDSN KSTSVYETCN ERIGEEQILT VIGIANLGTV
201: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)