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AT4G29550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT3G44770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT7SeggNOG:ENOG411083WEMBL:AL079344EMBL:AL161575
EMBL:AY084630EMBL:CP002687EMBL:DQ446881EnsemblPlants:AT4G29550
EnsemblPlants:AT4G29550.1entrez:829076GeneID:829076Genevisible:Q8LFV1
Gramene:AT4G29550.1hmmpanther:PTHR31260hmmpanther:PTHR31260:SF28HOGENOM:HOG000064597
InParanoid:Q8LFV1InterPro:IPR006462KEGG:ath:AT4G29550OMA:RFCALMT
PaxDb:Q8LFV1Pfam:PF04776Pfam:Q8LFV1PhylomeDB:Q8LFV1
PIR:T09918PRIDE:Q8LFV1PRO:PR:Q8LFV1Proteomes:UP000006548
RefSeq:NP_567829.1TAIR:AT4G29550TIGRfam:TIGR01572TIGRFAMs:TIGR01572
UniGene:At.31910UniProt:Q8LFV1
Coordinates (TAIR10) chr4:+:14502433..14503763
Molecular Weight (calculated) 41187.90 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.63
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVDRPLRI EETTVSHDVS SCGFISKEEW LNKHPPSGSG WTDEDDDNDD VFSSSFISKE ELSDAVHNDP PSGWTDEDDD DQVDPALEKE FYRQIRESDG
101: FDVDIRIPTS SLYVYKCANN DDLRGDIVGI CARVGLHWYN FQKGSNLELM HVDKYNSRFC ALMTYNITAE AVDPANDSRF TFQTCVTRAT CQKDEDLRIL
201: TEVCRIKPKI QGTGDEIKRW NDEAIDDIYK GNLPEWISDD TLMSCSEQDH FYRVQESDIR EHNWLQLYTE IASYSLWEGD MRLKSCVPLQ IKNVLVRTRE
301: DFKSKEKLKA GNAIFYISFR GVNTPHGPPQ DHRAIVRRTV DGIPGHVCLE FKCLLMDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)