AT4G27220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.993 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NB-ARC domain-containing disease resistance protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G27190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:13633953..13636712 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103920.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 919 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFRSNARALN RALERLKNVQ TKVNEALKRS GIQEKSLERK LRIWLRKVEE NVPLGELILE KRSSCAIWLS DKDVEILEKV KRLEEQGQDL IKKISVNKSS 101: REIVERVLGP SFHPQKTALE MLDKLKDCLK KKNVQKIGVW GMGGVGKTTL VRTLNNDLLK YAATQQFALV IWVTVSKDFD LKRVQMDIAK RLGKRFTREQ 201: MNQLGLTICE RLIDLKNFLL ILDDVWHPID LDQLGIPLAL ERSKDSKVVL TSRRLEVCQQ MMTNENIKVA CLQEKEAWEL FCHNVGEVAN SDNVKPIAKD 301: VSHECCGLPL AIITIGRTLR GKPQVEVWKH TLNLLKRSAP SIDTEEKIFG TLKLSYDFLQ DNMKSCFLFC ALFPEDYSIK VSELIMYWVA EGLLDGQHHY 401: EDMMNEGVTL VERLKDSCLL EDGDSCDTVK MHDVVRDFAI WFMSSQGEGF HSLVMAGRGL IEFPQDKFVS SVQRVSLMAN KLERLPNNVI EGVETLVLLL 501: QGNSHVKEVP NGFLQAFPNL RILDLSGVRI RTLPDSFSNL HSLRSLVLRN CKKLRNLPSL ESLVKLQFLD LHESAIRELP RGLEALSSLR YICVSNTYQL 601: QSIPAGTILQ LSSLEVLDMA GSAYSWGIKG EEREGQATLD EVTCLPHLQF LAIKLLDVLS FSYEFDSLTK RLTKFQFLFS PIRSVSPPGT GEGCLAISDV 701: NVSNASIGWL LQHVTSLDLN YCEGLNGMFE NLVTKSKSSF VAMKALSIHY FPSLSLASGC ESQLDLFPNL EELSLDNVNL ESIGELNGFL GMRLQKLKLL 801: QVSGCRQLKR LFSDQILAGT LPNLQEIKVV SCLRLEELFN FSSVPVDFCA ESLLPKLTVI KLKYLPQLRS LCNDRVVLES LEHLEVESCE SLKNLPFVPG 901: NTGMINEQMA WEYMSRTLG |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)