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AT4G19680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.824
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : iron regulated transporter 2
Curator
Summary (TAIR10)
encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.
Computational
Description (TAIR10)
iron regulated transporter 2 (IRT2); FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1381 Blast hits to 1243 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 183; Fungi - 601; Plants - 483; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G19680EnsemblPlants:AT4G19680.1entrez:827712gramene_pathway:6.6.1.1
gramene_pathway:PWY-5934hmmpanther:PTHR11040hmmpanther:PTHR11040:SF50Pfam:PF02535
tair10-symbols:ATIRT2tair10-symbols:IRT2TIGRfam:TIGR00820TMHMM:TMhelix
Coordinates (TAIR10) chr4:+:10703385..10704255
Molecular Weight (calculated) 27696.20 Da
IEP (calculated) 6.94
GRAVY (calculated) 0.59
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTKLVYIL LILFTFTVSP AISTAPEHCD SGFDNPCINK AKALPLKIVA IVAILTTSLI GVTSPLFSRY ISFLRPDGNG FMIVKCFSSG IILGTGFMHV
101: LPDSFEMLSS KCLSDNPWHK FPFAGFVAMM SGLVTLAIDS ITTSLYTGKN SVGPVPDEEY GIDQEKAIHM VGHNHSHGHG VVLATKDDGQ LLRYQVIAMV
201: LEVGILFHSV VIGLSLGATN DSCTIKGLII ALCFHHLFEG IGLGGCILQV RIYIHTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)