AT4G17590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 459 Blast hits to 368 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9800843..9802591 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 22585.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||
| Length | 201 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEHSKDSEN ISFSTAFGPR ISRMPATELV NDEPESLPIG ETPEHLSGRF MVIKGIIFAN ASTEHLLGSL YANLHRMGIT NTVVSNYNIN TKLSRVFHIN 101: SKDMVLVNAP STRTGLISEF GSIKMSINEE ADIQRFGVLQ KIVEGVHMSD YVDQLKDDIA SLYGYNRFLI RTLAATFSLA ELVKLIKAFE KLRSTYIRRI 201: L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)