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AT4G14365.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XB3 ortholog 4 in Arabidopsis thaliana
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XB3 ortholog 4 in Arabidopsis thaliana (XBAT34); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 5 in Arabidopsis thaliana (TAIR:AT3G23280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410J7S3eggNOG:ENOG410ZNDWEMBL:AF325044
EMBL:AL161538EMBL:AY062788EMBL:AY081602EMBL:AY087705
EMBL:CP002687EMBL:DQ086842EMBL:Z97336EnsemblPlants:AT4G14365
EnsemblPlants:AT4G14365.1entrez:827080Gene3D:1.25.40.20Gene3D:3.30.40.10
GeneID:827080Genevisible:Q9FPH0GO:GO:0008270GO:GO:0016567
GO:GO:0016874Gramene:AT4G14365.1hmmpanther:PTHR24188hmmpanther:PTHR24188:SF44
HOGENOM:HOG000242293InterPro:IPR001841InterPro:IPR002110InterPro:IPR013083
InterPro:IPR020683iPTMnet:Q9FPH0KEGG:ath:AT4G14365OMA:CISCLKE
PaxDb:Q9FPH0Pfam:PF12796Pfam:PF13857Pfam:PF13920
Pfam:Q9FPH0Pfscan:PS50088Pfscan:PS50089Pfscan:PS50297
PhylomeDB:Q9FPH0PRIDE:Q9FPH0PRO:PR:Q9FPH0PROSITE:PS50088
PROSITE:PS50089PROSITE:PS50297ProteinModelPortal:Q9FPH0Proteomes:UP000006548
RefSeq:NP_567428.1SMART:SM00184SMART:SM00248SMR:Q9FPH0
STRING:3702.AT4G14365.1SUPFAM:SSF48403SUPFAM:SSF57850TAIR:AT4G14365
tair10-symbols:XBAT34UniGene:At.23786UniPathway:UPA00143UniProt:Q9FPH0
Coordinates (TAIR10) chr4:-:8271660..8273685
Molecular Weight (calculated) 41385.00 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.25
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQQQSQSKD EMLFQEVSNN NVEGIKSLHH EGAGLEGVDK LGRTPLILAC TNDDLYDVAK TLLELGSNVN AYRSGCNGGT PLHHAAKRGL VHTVKLLLSH
101: GANPLVLDDD VKTALEVARD EGYSNVVRAI ESHICLFSGC MREYSGSSLL NLFAPQLLSR KVWVVVVPTG SRNPTKPLKL ELVLYDSIQD AQPRMVIPLW
201: KANLEEPKSF RCDDSVMIID DSRSPKSMRQ RRESGFISQA RRWAQVDRQI RLKLAAEIKG DMKQMNWFSE ACKGVPQPMN PPRFMKTSQA TTTTTNVPAL
301: SDDALTRVAM SLPSPKTANK EDGLCVICVD APSEAVCVPC GHVAGCISCL KEIENKKMGC PVCRANIDQV IKLYHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)