AT4G13130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: leaf whorl, hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G02540.1); Has 1641 Blast hits to 650 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1630; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7647389..7649692 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89630.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 767 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSEVEENVI SVITDTTFLI STNLKVDPRV ISLFSQLFYD WRSVYMEIKS LYPKMEFHLL LRQILKFWTS TDMGRQWKFV SLICKIMFLV SSMDLDSESE 101: LTSLIKKIIS LFNSKPDTGS ELVSLITQLM RIDTSVDSDS EPTQESELLS LISQLVSAKP EPELTSLTRR IISTFISMNW EPMQFISVCP QVMVELVHGK 201: LTTEVVRPRK AKERECELYA YEIWKSTRQI HFHCILCNGE NHEEYDKVPI EVKHPLHPRH SLQLAVRQWS EEETMIECYC CDEYLMDYYY YCSSCDFAMN 301: VSCLEKPPPV LSIDHPKWHQ HPLILFPSQA SFPCNLCALT HSSCPFYICP PCDFVVHQKC LSLPHVIRIS RHHHRISFTP SFEKGNWYCG ICRKKMDNDY 401: GGYTCLKDGC SYVAHSRCAT QKNVWDGLDL EGEPEEVEEE EVEPFVIISD GTIHHFSHPH HLRMDKNTGR DYDENKQCQA CITPIYFGNI YSCMQCNFIL 501: HEECANFSRK IHNPIHPHKL NLVGGYDGVT KYYKDFCSVC PRMCTNGFFY ECGKEECDRF KLHVQCATIS EPLVHESHVH PLFLTSKPRE RRRCGVCKKK 601: PLSHTETFNC IEGECTFALC FGCATLPHEV RYKHDKHMLT LSYGEETSTM MYWCEACEKE INSEERFYKC DEYCCVTLHI QCLIGKELYL KPGSSFEYDH 701: RHADVLLKTQ VMSRPICFQC KSRCPHNTVI QWSELVYCTI HCFLFGRLRW DEEERRRKQA EIDNKDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)