AT4G11810.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.711 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.2); Has 2483 Blast hits to 2480 proteins in 874 species: Archae - 51; Bacteria - 1442; Metazoa - 164; Fungi - 323; Plants - 253; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:7105446..7108450 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79423.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 707 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAFGKKLKE RSIEEWQEYY INYKLMKKKV KQYGPQIEVG SLDRRHVLKD FSRMLDHQIE KIALFMLEQQ GLLSSRLQKL REWHDTLQDE PDLSQIAKLR 101: EAYRAVGQDL LKLLFFIDMN AIGIRKILKK FDKRFGYRFT NYYVKTRADH PYSQLQQVFR HVGLGAVVGA ISRNLHELQN NEGSYLSIYD QPVLPLQDPV 201: VDSIKNAVDR LTHSTNFLNF MAQHALIMQD DEDLLMLPPD EQAEKEEGRY HFMSLLLNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GVVIGAMAVA 301: QLFSSVYFSA WSNKSYFKPL IFSSIVLFFG NLLYALAYDF NSLALLLIGR LFCGFGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL 401: QTDFKIKNVT FNQDTLPGWV MAVAWLLYLV WLAISFREPA REPEEIHTSQ ESTSEQIFCG EADQDGNIEK GLKKPLLLAS EETEHDEEDD GDGSEESSDD 501: SRKPANSFVA AYKLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFGW SMSSVSIFLF CLGLTVLPVN LVVGSYISNM FEDRQILLAS EIMVCIGIVL 601: SFHVVIPYTV PQYVISGFIM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGFLGQSML LNVTLLPSLI ICVLSILATC 701: YTYNSLY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)