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AT4G10350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 70
Curator
Summary (TAIR10)
NAC domain protein. SMB, BRN1, and BRN2 act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.
Computational
Description (TAIR10)
NAC domain containing protein 70 (NAC070); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 15 (TAIR:AT1G33280.1); Has 2970 Blast hits to 2965 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2970; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826627eggNOG:ENOG410IKGReggNOG:ENOG410YF47EMBL:AL049488
EMBL:AL161517EMBL:AY133681EMBL:CP002687EnsemblPlants:AT4G10350
EnsemblPlants:AT4G10350.1entrez:826627GeneID:826627Genevisible:Q9SV87
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009834GO:GO:0010628GO:GO:0045893GO:GO:0048829
Gramene:AT4G10350.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF18HOGENOM:HOG000237406
InParanoid:Q9SV87InterPro:IPR003441KEGG:ath:AT4G10350OMA:RATHAGF
PaxDb:Q9SV87Pfam:PF02365Pfam:Q9SV87Pfscan:PS51005
PhylomeDB:Q9SV87PIR:T04050PRIDE:Q9SV87PRO:PR:Q9SV87
PROSITE:PS51005ProteinModelPortal:Q9SV87Proteomes:UP000006548RefSeq:NP_192773.1
SMR:Q9SV87STRING:3702.AT4G10350.1SUPFAM:SSF101941TAIR:AT4G10350
tair10-symbols:ANAC070tair10-symbols:BRN2tair10-symbols:NAC070UniGene:At.33635
UniProt:Q9SV87
Coordinates (TAIR10) chr4:-:6415287..6416829
Molecular Weight (calculated) 38948.40 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.85
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQERCKI GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG SSSINSLDQH NHDASNNNHA LQARSFMHRD
201: SPYQLVRNHG AMTFELNKPD LALHQYPPIF HKPPSLGFDY SSGLARDSES AASEGLQYQQ ACEPGLDVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE
301: DSSRGITYED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)