AT4G07740.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.665 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3287) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF3287); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3287 (InterPro:IPR021704); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3287) (TAIR:AT5G35603.2); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:4539638..4540682 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 23114.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.75 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||
| Length | 198 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANEGVSLIC PLDLGIPLFL YGDSFDPTSV LFPHYVFYFP PKDKKESYDF ADKVIEKHRR ACDERQHLGL KRQTLEARIA QMERKMYLGS QGRVPDPNRV 101: PVKVIPFDSE EGDEEEDINT WKRVKTNPRW ATKPRRPLQN MEIDLYSTET VPDHSADGMI REEVPKVPDQ RPPLPRGYFR SEIWTPCTLI KDLPERDQ |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)