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AT4G07380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AF147262EMBL:AL161505
EMBL:CP002687EnsemblPlants:AT4G07380EnsemblPlants:AT4G07380.1entrez:826169
GeneID:826169Gramene:AT4G07380.1KEGG:ath:AT4G07380ncoils:Coil
PIR:H85071Proteomes:UP000006548RefSeq:NP_567314.1STRING:3702.AT4G07380.1
TAIR:AT4G07380UniGene:At.54184UniProt:Q9S9X6
Coordinates (TAIR10) chr4:-:4192429..4193016
Molecular Weight (calculated) 18503.30 Da
IEP (calculated) 3.84
GRAVY (calculated) -0.58
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAFLGSYSG KLEAVSGDLG VDVSEIAANN SSTLGLEAVA VKTRDLFSDY LNQLMVQDYT LAEENSLSFL DTIMENKEDT FQITDPSQQS NEEVSQEEVM
101: VNEETKEVDK MEEETQTNGE DNGTEVINPE IADVELPAKK RVVKNKAGLP GVNSRKRNPD FSLEADCI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)