suba logo
AT3G60560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL138646EMBL:CP002686EnsemblPlants:AT3G60560EnsemblPlants:AT3G60560.1
entrez:825227GeneID:825227Gramene:AT3G60560.1KEGG:ath:AT3G60560
PIR:T47867Proteomes:UP000006548RefSeq:NP_191615.1TAIR:AT3G60560
UniGene:At.54019UniProt:Q9M204
Coordinates (TAIR10) chr3:+:22382458..22382778
Molecular Weight (calculated) 12110.80 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.28
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: METLRDSKLS MEKSLQILRS ITLLVFYSIQ EKHGAEVEKM RTDLDIETGT NKSIQAMDDH TKRLCTALHE IGAQTEVAKR EHMHHLRLQS HEVPLLALGF
101: VLNCSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)