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AT3G50540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.715
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G50540EnsemblPlants:AT3G50540.1entrez:824218GeneID:824218Gramene:AT3G50540.1KEGG:ath:AT3G50540
PaxDb:F4J0N6Proteomes:UP000006548RefSeq:NP_190623.2TAIR:AT3G50540UniGene:At.53877UniProt:F4J0N6
Coordinates (TAIR10) chr3:+:18757749..18758244
Molecular Weight (calculated) 12751.60 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.49
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVVDEGEMK LWVDDMMDYG GDGEPKLIIT IKNSSSQFGY SLKLKHLDSR WWRRDCWWRK DREVERRRKD VLMELNYRGK LVNLIHRKCF ILLALYENAQ
101: SLIFGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)