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AT3G49450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1916 Blast hits to 1849 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1916; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQSJeggNOG:ENOG41116DDEMBL:AC012329EMBL:AL132964
EMBL:CP002686EMBL:DQ056618EnsemblPlants:AT3G49450EnsemblPlants:AT3G49450.1
entrez:824107GeneID:824107Genevisible:Q9SCL2Gramene:AT3G49450.1
hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703InParanoid:Q9SCL2
InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451KEGG:ath:AT3G49450
OMA:SNPFYIFPaxDb:Q9SCL2Pfam:PF00646Pfam:PF08268
Pfam:Q9SCL2Pfscan:PS50181PhylomeDB:Q9SCL2PIR:T46223
PRIDE:Q9SCL2PRO:PR:Q9SCL2PROSITE:PS50181ProteinModelPortal:Q9SCL2
Proteomes:UP000006548RefSeq:NP_190514.1SMART:SM00256SMR:Q9SCL2
SUPFAM:SSF81383TAIR:AT3G49450TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.62413UniProt:Q9SCL2
Coordinates (TAIR10) chr3:-:18337305..18338498
Molecular Weight (calculated) 45435.40 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.13
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKKRKRKVS KENVALTISS SVGEYGENSG TLPTDLMVEI LSRVPAKSAA RFRCVSNDWN SLLRSPYLTN LFLKRSSARP HLLITFQAEG KWSFFSSPEY
101: LISDQNSNLV VVDNHMDVPK DYSFGVCVPV CGLMCTSNEW VLSRKRDARM MICNPSTGQF KSLPKVRSCR GNVITYIGYN PIEKQYKVLC MTIREKPFKF
201: KAEEHQVLTL GTGKLKWRML ECSVDHYPYY HGSICINGVL FYLAMKSESK EYMTVSFHMK DENFMFIPNQ DLLSTLINYK GRLGGIRHKS FGFMDGGDVG
301: FELWILDVVN QEWIRSIHVL PPMWKDVVGE TRVYFVGIIG SCEVVFSPFV KSNPFYIFHL DMKSNSITRV EIKGTGPLEG QAVYTFVNHI ENVNLIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)