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AT3G30460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02340.1); Has 10074 Blast hits to 10050 proteins in 286 species: Archae - 0; Bacteria - 6; Metazoa - 2769; Fungi - 830; Plants - 4947; Viruses - 70; Other Eukaryotes - 1452 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK175589EMBL:AK175730EMBL:AP000389EMBL:BT010504EMBL:CP002686
EnsemblPlants:AT3G30460EnsemblPlants:AT3G30460.1entrez:822758Gene3D:3.30.40.10GeneID:822758GO:GO:0008270Gramene:AT3G30460.1
hmmpanther:PTHR22763hmmpanther:PTHR22763:SF8HOGENOM:HOG000153031InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT3G30460OMA:SNRNTCPPfam:PF13639Pfscan:PS50089PhylomeDB:Q9LJV5
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_189667.1SMART:SM00184SMART:SM00744SMR:Q9LJV5SUPFAM:SSF57850
TAIR:AT3G30460UniGene:At.36776unipathway:UPA00143UniProt:Q9LJV5
Coordinates (TAIR10) chr3:+:12104433..12104876
Molecular Weight (calculated) 16940.70 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.51
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEFHLPLN LTEPDQTPTE EDFEADTTLI DDEYLRYLHY LDSRSNHGVN TFGSYDEIFG LVLGNSSSCT RWLNAGEELP VVEFTAEEMM ERGLVVCAIC
101: REELAANERL SELPCRHYYH KECISNWLSN RNTCPLCRHN VELPNHG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)