AT3G28630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.398 endoplasmic reticulum 0.228 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF569) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT3G01311.1); Has 233 Blast hits to 211 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10729065..10730564 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37974.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||
| Length | 335 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIFNPILGGK IAAVAIKRSL FQIFVILYKR TIMEIFKKAE TVRLRSYHDK YLLAEEDEES VSQDRDGRSM NARWTVEVVE KADVIRLKSC FGKYLTASNI 101: PMFLGMTGKR VTQTLPRRLD SSTEWEPVRE GVQVRLKTRY GQYLRANGGL PPWRNSITHD IPHRSTTQDW VLWDIDILES RKKKAPPVAE PAYTPLPPPP 201: PPPELLQVRK DDHQEPNSPK GFSLRSPRFS KSESDDTVSS PVKADGRLIY YRIGDEDGNV DETAKEELFC FKGMGLEELK EKLIEETGLS DISICSKNPL 301: NGKLYPLRLH LPPNNTKMHV VLIPSPSKGD AASTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)