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AT3G28280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.769
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXE9eggNOG:ENOG411041VEMBL:AP002051EMBL:CP002686EnsemblPlants:AT3G28280EnsemblPlants:AT3G28280.1entrez:822454
GeneID:822454Genevisible:Q9LHD8Gramene:AT3G28280.1hmmpanther:PTHR31264hmmpanther:PTHR31264:SF14InParanoid:Q9LHD8InterPro:IPR001810
KEGG:ath:AT3G28280PaxDb:Q9LHD8Pfam:PF00646Pfam:Q9LHD8PRO:PR:Q9LHD8PROSITE:PS50181ProteinModelPortal:Q9LHD8
Proteomes:UP000006548RefSeq:NP_189468.1SMR:Q9LHD8SUPFAM:SSF81383TAIR:AT3G28280UniGene:At.53534UniProt:Q9LHD8
Coordinates (TAIR10) chr3:-:10540646..10541571
Molecular Weight (calculated) 31539.60 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.12
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDSPYFRDL FLSIHQNSHY SSWSILSRCD EEVIAHYGCN TWGLQRSLHF YISSFLTKKF ETQRNNYKVW SYSTDVGMIL ISENCICVKN RSLYVANPVS
101: QECVEIPSHG YLKKVSCPLG IATRTENGVL LDYKVVLFNG SDTFRRLLIY SSQTGMWSIN TVDLTVSGFH NQSPISLHGS IHWIASTSHS EDVAVSFDLY
201: ATGTSSVQCR VTTFPDFGKH PKFTRSFSTC QGSLMYMNII SITKVDGSLE IISARLYWFL KEKNGRKVLP QCQPTPLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)